PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493068.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 480aa    MW: 53709.2 Da    PI: 5.3465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.8e-12293335754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  Av+Y+k+L
  XP_004493068.1 293 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAVDYLKEL 335
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.593286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16289357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9292335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.51E-13293339No hitNo description
Gene3DG3DSA:4.10.280.103.6E-15293348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.78E-7408469No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MERYTLPLPP GVHNTLTIPW TEPQQLTSWT TPNSEPKHND QDIAIAIAMG SSLPFFKPEP  60
QPEPDINYYN INNSDNSPSN YVHVPFDSNP TKTTDNFLLH QNTNTMDASN PHPFFQNNNN  120
YFFNNNNNNN NPFEMGFENG FFMGNNNTSI SNTSVFMGGS LELSSASEFP PSLELEAPPP  180
PPPVVPFNAS FSMPLELSQP QQQQPTTLFQ KRRGALEIPR LETVGNKKKR KVEKKWEEEG  240
NEVDGDVDVD DFSGLNYDSD ENGNDLNNSN GTVVTGGDQK GKKKKGLPAK NLMAERRRRK  300
KLNDRLYMLR SVVPKISKMD RASILGDAVD YLKELLQRIN DLHNELESTP PGSLLPPSAT  360
ASFHPLTPTP PTLPCRVKED LYPSDLLSPK NQSPKVEVRV REGRAVNIHM FCTRRPGLLL  420
STMRALDTLG LDVQQAVISC FNGFALDVFR AEQQCREGQD VLPEQIKAVL LDSAGYHSMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231KKKRKV
2282300KKKGLPAKNLMAERRRRKK
3294301ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1362460.0BT136246.1 Medicago truncatula clone JCVI-FLMt-19P18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493068.10.0PREDICTED: transcription factor ICE1 isoform X1
SwissprotQ9LSE21e-117ICE1_ARATH; Transcription factor ICE1
TrEMBLQ2HUL60.0Q2HUL6_MEDTR; Basic helix loop helix protein BHLH23
STRINGVIT_14s0068g01200.t011e-121(Vitis vinifera)
STRINGGLYMA16G05390.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-104bHLH family protein